Showing : RNA Seq • reset
2
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5
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3.3k
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Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 4.1 years ago by ★ 13k • written 4.1 years ago by ▴ 830
0
votes
9
replies
2.6k
views
How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 3.6 years ago by ▴ 150 • written 4.6 years ago by • 0
1
vote
2
replies
1.9k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.0 years ago Mozart ▴ 30
0
votes
0
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1.6k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.2 years ago lawarde.ankita1 ▴ 30
1
vote
5
replies
1.3k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
5
votes
3
replies
976
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 4.9 years ago by ★ 3.0k • written 4.9 years ago by ▴ 20
0
votes
2
replies
953
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
1
vote
4
replies
903
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 30
3
votes
3
replies
892
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by • 0
0
votes
2
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783
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.6 years ago by ▴ 200 • written 4.6 years ago by • 0
0
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3
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653
views
Normalization of RNA seq data
RNA seq cpm
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
1
reply
552
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
0
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0
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497
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searching for specific RNA sequences
rna seq
4.5 years ago adeler001 • 0
13 results • Page 1 of 1
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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
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Comment: deseq2 results by sajadahmad41454 • 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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